If you’re on the lookout for a dessert that perfectly blends the comforting warmth of fall flavors with a creamy, dreamy texture, then you’ll absolutely adore this Gluten Free Apple Cheesecake Bars Recipe. Each bite offers a buttery, crunchy crust, a luscious cheesecake center, and a vibrant apple topping sprinkled with a crumbly, cinnamon-spiced streusel that creates a harmony of taste and texture unlike any other gluten free apple dessert. Trust me, once you try these bars, they’ll become your go-to sweet treat whether it’s for a cozy night in or impressing guests at your next gathering.

Ingredients You’ll Need
The magic of this Gluten Free Apple Cheesecake Bars Recipe lies in the simplicity and purpose of each ingredient. Every item has its unique role, from the buttery gluten-free crust that provides the perfect base to the fragrant spices elevating the apple topping. Together, they create a balance of creamy, crunchy, sweet, and tangy that is simply irresistible.
- 1½ cups gluten-free graham cracker crumbs: This forms a crunchy, sturdy crust that holds the bars together beautifully while being gluten free.
- ¼ cup granulated sugar: Adds just the right amount of sweetness to the crust without overpowering the other flavors.
- 6 tablespoons unsalted butter, melted: Binds the crust ingredients, providing richness and a golden color once baked.
- 16 oz cream cheese, softened: The star of the cheesecake layer, offering a smooth, creamy texture and tangy flavor.
- ½ cup granulated sugar: Sweetens the cheesecake mix gently for a perfect balance with the tart apples.
- 2 large eggs: Help to set the cheesecake layer, ensuring it’s firm but tender.
- 1 teaspoon vanilla extract: Adds a warm, fragrant note that complements the creamy filling wonderfully.
- 2 medium apples, peeled and finely diced: Choose tart varieties like Granny Smith for a bright, fresh contrast in every bite.
- 2 tablespoons brown sugar: Enhances the natural sweetness of the apples and adds moisture.
- 1 teaspoon ground cinnamon: Brings cozy, aromatic spice to the apple topping, key for that fall-inspired flavor.
- ¼ teaspoon nutmeg: Adds a subtle warmth that pairs beautifully with the cinnamon and apple.
- ½ cup gluten-free oats: Gives the streusel topping a hearty, rustic texture.
- ¼ cup gluten-free flour blend: Helps hold the streusel together while keeping it tender.
- ¼ cup brown sugar: Sweetens and caramelizes the streusel to golden perfection.
- ¼ teaspoon cinnamon: Adds a touch of spice that complements the apple topping.
- 3 tablespoons cold unsalted butter, cubed: Cut into the streusel for a crumbly, melt-in-your-mouth topping.
How to Make Gluten Free Apple Cheesecake Bars Recipe
Step 1: Prepare the Crust
Begin by preheating your oven to 350 degrees Fahrenheit and lining an 8×8-inch baking pan with parchment paper. Mix the gluten-free graham cracker crumbs, granulated sugar, and melted butter in a bowl until everything is well combined. The mixture should hold together when pressed. Press this mixture firmly into the bottom of your lined pan to create an even layer. Bake this crust for about 8 minutes to set it, then remove and let it cool slightly so it’s ready to support the creamy layers that follow.
Step 2: Make the Cheesecake Layer
In a large bowl, beat the softened cream cheese together with sugar until the mixture is smooth and creamy, without lumps. Add the eggs one at a time, beating after each addition to incorporate well. Finally, stir in the vanilla extract, mixing until everything is perfectly blended. Pour this luscious cheesecake batter evenly over the cooled crust, using a spatula to smooth the surface for an even, professional look.
Step 3: Prepare the Apple Topping
In a separate bowl, toss the peeled and finely diced apples with brown sugar, ground cinnamon, and nutmeg. The sugar will draw out some moisture from the apples, blending with the spices to create an irresistible juicy topping. Carefully distribute this apple mixture evenly over the cheesecake layer, making sure every bar will get a good amount of those cinnamon-spiced bites.
Step 4: Create the Streusel Crunch
To make the streusel topping, combine gluten-free oats, gluten-free flour, brown sugar, and cinnamon in a bowl. Cut in the cold, cubed butter using a fork or your fingers, mixing until the mixture resembles coarse crumbs. This butter incorporation is crucial to achieving a crumbly, crunchy texture that will bake to a golden finish. Sprinkle the streusel evenly over the apple layer to add that perfect finishing touch.
Step 5: Bake to Perfection
Bake the entire pan for about 35 to 40 minutes, or until the center of the cheesecake looks set and no longer jiggles when you gently shake the pan. This slow, steady baking ensures the cheesecake is creamy, not rubbery, and the streusel topping is crisp and golden brown. Once out of the oven, allow the bars to cool completely to room temperature before refrigerating for at least 2 hours — chilling is key to slicing perfect bars.
How to Serve Gluten Free Apple Cheesecake Bars Recipe

Garnishes
These bars are delightful on their own but become even more special when garnished thoughtfully. A light dusting of powdered sugar adds a festive touch, while a dollop of whipped cream or a drizzle of caramel sauce makes them feel luxuriously indulgent. Fresh apple slices alongside can enhance the apple theme and add a crisp bite contrast.
Side Dishes
Pair these cheesecake bars with some fresh fruit or a scoop of vanilla ice cream to round out a dessert experience. For a cozy afternoon, a warm cup of chai tea or spiced coffee beautifully complements the cinnamon and nutmeg notes. The subtle tartness of the apples in the bars also pairs wonderfully with a crisp glass of sparkling apple cider.
Creative Ways to Present
For parties or gift-giving, slice the bars into smaller bite-sized squares and arrange them on a pretty platter with fresh mint leaves for a pop of color. You can also serve individual bars topped with a cinnamon stick or edible flowers for a gourmet appearance that will wow your guests. Wrapping them in parchment paper tied with twine makes a charming homemade gift.
Make Ahead and Storage
Storing Leftovers
Leftover Gluten Free Apple Cheesecake Bars Recipe bars should be stored in an airtight container in the refrigerator. They stay fresh for up to 4 days, making them a perfect make-ahead dessert for busy weeks or unexpected guests. The flavors actually deepen and meld further after a day, so leftovers taste fantastic.
Freezing
If you want to keep these bars longer, freezing is an excellent option. Wrap each bar individually in plastic wrap and place them in a freezer-safe container or bag. They will maintain their delicious flavor and texture for up to 2 months. To enjoy, thaw them overnight in the refrigerator before serving.
Reheating
Reheat your bars gently in a warm oven at 300 degrees Fahrenheit for 5 to 7 minutes if you prefer them slightly warm. Avoid microwaving to prevent the crust and streusel from becoming soggy. A brief warm-up brings out the creaminess of the cheesecake and enhances the apple aroma beautifully without compromising texture.
FAQs
Can I use any type of apples for the Gluten Free Apple Cheesecake Bars Recipe?
While you can use a variety of apples, tart varieties like Granny Smith work best because their acidity balances the sweetness and holds their shape well during baking, giving you a fresh apple bite with every mouthful.
Is it possible to make this recipe dairy-free?
Absolutely! Substitute the cream cheese and butter with plant-based alternatives such as vegan cream cheese and coconut oil or vegan butter. The texture and flavor will be slightly different but still deliciously satisfying.
Can I make these bars ahead of time?
Yes, these bars are fantastic when made ahead. They need to chill for at least 2 hours before slicing, but you can prepare them a day in advance and store them in the refrigerator for up to 4 days without losing flavor or texture.
Do I have to use gluten-free graham crackers?
For this Gluten Free Apple Cheesecake Bars Recipe, gluten-free graham cracker crumbs are essential to keep the dish safe and delicious for those avoiding gluten. Using regular graham crackers would introduce gluten and defeat the purpose of this recipe.
Can I substitute the streusel topping with nuts?
You can substitute all or part of the oats and flour in the streusel with chopped nuts like pecans or walnuts. This adds a lovely crunch and extra flavor, though it will change the topping’s texture slightly. Make sure the nuts are chopped finely for even coverage.
Final Thoughts
This Gluten Free Apple Cheesecake Bars Recipe has quickly become one of my absolute favorite ways to celebrate fall’s best flavors with a delightful twist that everyone can enjoy, regardless of gluten sensitivity. The balance of creamy cheesecake, tart apples, and crumbly streusel topping is nothing short of heavenly. I promise, once you bake these bars, they’ll become a staple in your dessert rotation, perfect for cozy nights, festive gatherings, or simply treating yourself to something special.
Print
Gluten Free Apple Cheesecake Bars Recipe
- Prep Time: 20 minutes
- Cook Time: 40 minutes
- Total Time: 1 hour
- Yield: 9 bars
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Gluten Free
Description
These Gluten Free Apple Cheesecake Bars combine a buttery gluten-free graham cracker crust with a creamy cheesecake layer, topped with tender spiced apples and a crunchy gluten-free oat streusel. Perfect for fall, this dessert offers a delicious balance of sweet, tangy, and warm spices, making it a crowd-pleaser that’s also suitable for gluten-sensitive diets.
Ingredients
Crust
- 1½ cups gluten-free graham cracker crumbs
- ¼ cup granulated sugar
- 6 tablespoons unsalted butter, melted
Cheesecake Layer
- 16 oz cream cheese, softened
- ½ cup granulated sugar
- 2 large eggs
- 1 teaspoon vanilla extract
Apple Topping
- 2 medium apples, peeled and finely diced
- 2 tablespoons brown sugar
- 1 teaspoon ground cinnamon
- ¼ teaspoon nutmeg
Streusel Topping
- ½ cup gluten-free oats
- ¼ cup gluten-free flour blend
- ¼ cup brown sugar
- ¼ teaspoon cinnamon
- 3 tablespoons cold unsalted butter, cubed
Instructions
- Preheat and Prepare Pan: Preheat oven to 350°F. Line an 8×8-inch baking pan with parchment paper to ensure easy removal of bars later.
- Make Crust: In a bowl, mix the gluten-free graham cracker crumbs, granulated sugar, and melted butter until combined. Press the mixture firmly into the bottom of the prepared pan to form an even crust. Bake for 8 minutes until slightly set, then remove and let cool slightly.
- Prepare Cheesecake Layer: In a large bowl, beat the softened cream cheese and granulated sugar together until smooth and creamy. Add eggs one at a time, beating well after each addition, then mix in the vanilla extract to combine. Pour the cheesecake batter over the cooled crust and smooth the surface.
- Prepare Apple Topping: In a separate bowl, toss the peeled and finely diced apples with brown sugar, ground cinnamon, and nutmeg until the apples are evenly coated. Spread this apple mixture evenly over the cheesecake layer in the pan.
- Make Streusel Topping: In another bowl, combine gluten-free oats, gluten-free flour blend, brown sugar, and cinnamon. Cut in the cold, cubed butter using a fork or fingers until the mixture resembles coarse crumbs. Sprinkle this streusel evenly over the apple layer.
- Bake the Bars: Bake in the preheated oven for 35–40 minutes, or until the center is set and the streusel topping is golden brown.
- Cool and Chill: Allow the bars to cool completely at room temperature. Then refrigerate for at least 2 hours to firm up before slicing into 9 bars for serving.
Notes
- Use tart apples like Granny Smith for the best balance of flavor and texture.
- These bars can be made ahead and stored covered in the refrigerator for up to 4 days.
- For a dairy-free version, substitute plant-based cream cheese and butter alternatives.

